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ZotDefend Linux Installation (School of Physical Sciences ONLY) Trellix HX Agent  Trellix Installation Instructions The .tgz package (Linux) includes the following files:HX Client Software (tgz bundle) Agent .rpm files. Agent .deb files. Agent .run f...

Download “CODEV202503FCS.exe” from https://joko.ps.uci.edu/index.php/s/sBnkT6fbimTp3GK  Please use the password that provided by your faculty.  NOTE: This installation requires you to restart your computer when it is finished installing...    ...

User home directories are regularly backed up, but limited in space. Individual quotas start at 20GB, but can be increased on request. They are NFS mounted from the server node nfs-0, and appear on every user-accessible node as "/nfspool-0/home/username". Your...

We have several Distributed File Systems on Greenplanet. They are generally accessible from every node, and are each made up of multiple servers. Data /DFS-L/DATA (1.6PB) DFS-L is the current main Lustre (2.12) file system for data. The /DFS-L/DATA subdirector...

Each compute and login node has a local storage area, accessible as /scratch and /work. On most nodes, this is a small disk (200GB-1TB), but some diskless nodes use space on /XXX-L. Single-node slurm jobs can create temporary workspace her under the user's dir...

While Jupyter notebooks can be run on any login node by installing the needed packages via conda or pip, running on compute nodes can be tricky. We have installed JupyterHub servers on gplogin2 and gplogin3 that can spawn JupyterLab sessions as slurm jobs. Sta...

1. Close all MATLAB windows and restart your computer. 2. Go to DUO Desktop at the lower right corner of your laptop. 3. Click on three bars at the top right corner of DUO Desktop App. 4. Click "Quit". 5. Start MATLAB, and it should prompt you to sign in. 

Environment Modules (Lmod) are used to configure your environment for many pieces of installed software on greenplanet, including compilers and MPI environments. To see a list of available packages, type: "ml spider" ml spider To load a specific package/versio...

The default installation of Miniconda may have restrictive licensing on some packages. The drop-in replacement "miniforge" will set up a similar minimal conda environment that defaults to the "conda-forge" channel of open packages. As the packages in Python di...

The default installation of Miniconda may have restrictive licensing on some packages. The drop-in replacement "miniforge" will set up a similar minimal conda environment that defaults to the "conda-forge" channel of open packages. As the packages in Python di...

While Jupyter notebooks can be run on any login node by installing the needed packages via conda or pip, running on compute nodes can be tricky. We have installed JupyterHub servers on gplogin2 and gplogin3 that can spawn JupyterLab sessions as slurm jobs. Sta...

MacOS 10.9 and later (11.2 “Big Sur” Working as of 4 March 2021): Upgrade OS to latest available (not always necessary, but usually avoids bugs) Upgrade to (or install) XQuartz-2.8.5 Log out/Log in to your Mac (may not be needed for upgrades from earlier 2.8....

Here are a list of X Windows servers for Windows X2Go Requires an X2Go server on the target server. Creates a full remote desktop connection. https://wiki.x2go.org/doku.php https://wiki.x2go.org/doku.php/doc:installation:x2goclient Note: X2Go is great fo...

X2Go Requires an X2Go server running on the target server. Creates a full remote desktop session. Client can be installed through the system repos, eg on Ubuntu: sudo apt install x2goclient X11 Forwarding As long as your current environment supports X11, X11 f...

Here are the compiler options on the new side of the cluster (gplogin2/3).  gnu => GCC; intel => Intel Parallel Studio XE; mkl => Intel Math Kernel Library For MPI Variants see this page. Compiler/Version To use gnu/4.8.5gnu/7.2.0gnu/7.3.0gnu/8.1.0g...

OpenMP is a threading option built into GCC/Intel compilers. https://www.openmp.org/resources/openmp-compilers-tools/ Intel options: OpenMP 4.5 C/C++/Fortran supported in version 17.0 compilers OpenMP 4.5 C/C++/Fortran supported in version 18.0 compilers Com...

Here are all the possibilities for the currently installed OpenMPI versions, so you can compile any application with the desired version of OpenMPI. OpenMPI Version Use GNU Compiler Use Intel Compiler openmpi/1.10.7 ml gnu/7.2.0 openmpi/1.10.7 m...

Below is a table of all custom compiled software available on the new side of cluster (gplogin2/3) via lmod.If compiling an app from source see Compiler Variants.If compiling an MPI app from source see OpenMPI Variants.  This serves as a quick reference on how...