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Environment Modules (Lmod) are used to configure your environment for many pieces of installed software on greenplanet, including compilers and MPI environments. To see a list of available packages, type: ml spider To load a specific package/version, type: ...

The default installation of Miniconda may have restrictive licensing on some packages (see https://stackoverflow.com/a/78766306 for some explanation). The drop-in replacement "miniforge" will set up a similar minimal conda environment that defaults to the "con...

Instructions: http://qiime.org/install/install.html wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh chmod u+x Miniconda3-latest-Linux-x86_64.sh ./Miniconda3-latest-Linux-x86_64.sh When installing Miniconda it will prompt you for ...

MacOS 10.9 and later (11.2 “Big Sur” Working as of 4 March 2021): Upgrade OS to latest available (not always necessary, but usually avoids bugs) Upgrade to (or install) XQuartz-2.8.5 Log out/Log in to your Mac (may not be needed for upgrades from earlier ...

Here are a list of X Windows servers for Windows X2Go Requires an X2Go server on the target server. Creates a full remote desktop connection. https://wiki.x2go.org/doku.php https://wiki.x2go.org/doku.php/doc:installation:x2goclient Note: X2Go ...

X2Go Requires an X2Go server running on the target server. Creates a full remote desktop session. Client can be installed through the system repos, eg on Ubuntu: sudo apt install x2goclient X11 Forwarding As long as your current environment supports X11, ...

Here are the compiler options on the new side of the cluster (gplogin2/3).  gnu => GCC; intel => Intel Parallel Studio XE; mkl => Intel Math Kernel Library For MPI Variants see this page. Compiler/Version To use gnu/4.8.5gnu/7.2.0gnu...

OpenMP is a threading option built into GCC/Intel compilers. https://www.openmp.org/resources/openmp-compilers-tools/ Intel options: OpenMP 4.5 C/C++/Fortran supported in version 17.0 compilers OpenMP 4.5 C/C++/Fortran supported in version 18.0 compile...

Here are all the possibilities for the currently installed OpenMPI versions, so you can compile any application with the desired version of OpenMPI. OpenMPI Version Use GNU Compiler Use Intel Compiler openmpi/1.10.7 ml gnu/7.2.0 ...

Below is a table of all custom compiled software available on the new side of cluster (gplogin2/3) via lmod.If compiling an app from source see Compiler Variants.If compiling an MPI app from source see OpenMPI Variants.  This serves as a quick reference on ho...

Greenplanet uses the Slurm queue and job scheduler. We are currently running version 20.02.5, which has reasonably easy-to-follow documentation. There is also a Cheat Sheet of command options. A nice introduction is available from the Slurm User Group 2017 con...

Some partitions are limited to certain groups (see Notes column) Greenplanet Partitions (gplogin2/gplogin3)[Partitions in blue are best for general use][Partitions in red are only on the side being upgraded to Rocky 8/Alma 9 (gplogin1)] Par...

This is example is based on using gplogin2, the login node for the new side of cluster. We use lmod on gplogin2/3 as opposed to environment-modules on gplogin1. All examples below are created in your home directory via copy-and-paste into your GP shell accou...

Remember gplogin* (login node) is a shared resource, so one shouldn't be running matlab directly on a login node. It's not a problem until someone points it out as a problem, so we need everyone to get in the habit of requesting an interactive session for Matl...

Note at : https://uci.atlassian.net/wiki/spaces/IAMDOCS/pages/9372281/General+Shibboleth+SAML+Topics Click login on the top right to view.   Go to settings -> SAML Enable SAML SAML IDP Metadata - > https://shib.service.uci.edu/metadata.xml Attribute Mapp...

DO NOT IMPORT ALL PEOPLE AT ONCE. YOU WILL BREAK YOUR DATABASE AND NEED TO RESTORE A BACKUP.  (Settings -> Backup) Speaking of which, make a backup before you follow these instructions. Prerequisite: You must have an account that can view the information yo...

Having computer trouble? Open a ticket by emailing pshelpdesk@uci.edu or going to https://ps.uci.edu/pshelpdesk Make sure to describe the problem you are having.For example, instead of saying "Computer broken", say "Computer will not turn on". When di...

We no longer offer an email server separate from the Campus email options. You can choose either UCI Microsoft 365 or UCI Gmail. For more information, see the OIT Wiki Page at: https://www.oit.uci.edu/services/communication-collaboration/email/

Clear login identity https://support.microsoft.com/en-us/office/uninstall-office-for-mac-eefa1199-5b58-43af-8a3d-b73dc1a8cae3 clear keychain of all MS/Office/Windows stuff

Go to the course webpage. You can see the code on this webpage the student will need later. Grab courseID from the URL  Go to admin -> add product to store Choose org and enter the ID 0 price for free or any price (ask about this) Code to unlock Once ...